Amplicon Metabarcoding Workshop
March 13-15, 2024 — Wooster Campus, OSU
Day | Time | Topic | Type | By |
---|---|---|---|---|
Wed | 1 - 2 pm | 01: Intro to metabarcoding | Lecture | Tim |
2:15 - 3 pm | 02: Intro to OSC & VS Code | Lab | Jelmer | |
3 - 4:30 pm | 03: Read QC & primer trimmming | Lab | Jelmer | |
Thu | 1 - 2 pm | 04: ASV/OTU calling and pipeline considerations | Lecture | Soledad |
2:15 - 3:15 pm | 05: Calling ASVs with the DADA2 pipeline | Lab | Tim | |
3:30 - 4:30 pm | 06: Alpha & beta diversity statistics | Lab | Tim | |
Fri | 1 - 1:30 pm | 07: Differential abundance analysis | Lab | Melanie |
1:30 - 3 pm | 08: Intro to network analysis | Lab | Melanie | |
3 - 4 pm | 09: Defining a core microbiome | Lab | Fiama | |
4 - 4:30 pm | 10: SRA data submission | Lab | Fiama |